Dugé de Bernonville, Thomas

Possible issue with mate CIGAR string

10

Hi @ksahlin ! sorry for bothering you again! I am trying to run GATK haplotypecaller on reads mapped with Strobealign. The Haplotypecaller ends with an error: `java.lang.IllegalArgumentException: Sequence [VC HC...

automatically reverse-complement nt sequences

2

Hi @rcedgar, thanks a ton for your efforts to provide useful tools to the community! I was interested in switching from MAFFT to MUSCLE5 for large alignments of virus genomes....

Hi @Kuanhao-Chao , I was able to properly run Lifton using one plant reference genome and a new one to annotate from the same species. The command was: ``` lifton...