Syutenjyo

作者您好 我从`http://rest.kegg.jp/list/organism`获取了所有所有物种名称后，使用createKEGGdb包进行全体物种的KEGG数据库构建 ```R create_kegg_db(keggOrganism) ``` 结果在下载到第475个物种时，发生错误如下： ```R Reading KEGG annotation online: "https://rest.kegg.jp/list/pathway/vps"... Reading KEGG annotation online: "https://rest.kegg.jp/list/pathway/vcrb"... Reading KEGG annotation online: "https://rest.kegg.jp/list/pathway/vve"... Error in content[, 1] : 下标出界 ``` 请问如何处理呢？

KeyError

2

Hello, When I try to run cobra, I just get error message like this ``` (cobra) wk@t:~/res/20240905_cobra$ cobra-meta -f /home/wk/res/test/SPAdes/contigs.fasta -q /home/wk/res/20240905_cobra/metaSpades_contigs_top5.tsv -a metaspades -mink 21 -maxk 121 -m /home/wk/res/test/mapping/test_sorted.bam...

error: XDG_RUNTIME_DIR is invalid or not set in the environment

1

**Describe the bug** When running the command gw GRCh38.fa, the following error messages are displayed: "error: XDG_RUNTIME_DIR is invalid or not set in the environment. GLFW Error: GLX: No GLXFBConfigs...