SusiJo

@apeltzer suggested to look at [peddy](https://github.com/brentp/peddy) or [Sex.DetERRmine](https://github.com/TCLamnidis/Sex.DetERRmine) which are both already available in MultiQC.

Hi, this might be also of interest: The developers of Ascat recommend to use the [Battenberg reference files](https://github.com/Wedge-lab/battenberg#required-reference-files) for WES and explain how they can be created [see here](https://github.com/VanLoo-lab/ascat/issues/97).

Hi @asp8200, I agree with Lasse, it looks good overall. Could you double check some md5sums if they are really correct?

So they fixed the issue on the master branch but we probably need to wait for the 3.1 release to make a new mulled container.

Hi! I started working on integrating the [msisensor2 module](https://github.com/nf-core/modules/blob/master/modules/nf-core/msisensor2/msi/main.nf) into sarek, but unfortunantely it only takes `bam` as input. So I opened an [issue](https://github.com/niu-lab/msisensor2/issues/34) - maybe they can integrate `cram`...

The container with conda uses `htslib=1.15.1` while the docker/singularity containers use `htslib=1.15`, therefore the files created with conda have checksums that differ from the `test.yml`. They just contain a different...

Thanks! Somehow I didn't come up with just using a substring 😅

Hi @newgene, Is this issue being worked on? It would be a really nice feature to query OncoKB.

@newgene I see, but thanks anyways

Hi, We encountered a similar problem in some plots that the number of actually DE genes is not matching the dots represented in the static images. @kevinblighe: Could it be...