elastix
elastix copied to clipboard
SuperElastix
Official elastix repository
According to the manual https://elastix.lumc.nl/download/elastix-5.0.1-manual.pdf > The support for .vtk files is still a bit limited. Currently, only ASCII files are supported, with triangular meshes. It seems to me that...
Upgraded ITK on the CI to version 5.3 RC04, which was tagged on 12 July 2022: https://github.com/InsightSoftwareConsortium/ITK/releases/tag/v5.3rc04 Follow-up to pull request https://github.com/SuperElastix/elastix/pull/620 commit a0cf5235691ab0e7416600ed29db5abf2ff8ffe2 "COMP: Upgrade ITK from v5.2.0 to...
The outputpoints.txt file format (produced by `transformix -def inputPoints.txt...`) appears a bit too verbose, and old-fashioned. For example: ``` Point 0 ; InputIndex = [ 0 0 ] ; InputPoint...
Hi all, I'm currently working on intra-patient registration of DWI to T2 images. It is known and I can clearly see in my data that the main geometric distortion occurs...
Currently, when running elastix/transformix it is only possible to specify the output directory, and not specifically the output name. For example, from elastix the output files will always be named...
If we perform a rigid transformation T1 and an nonrigid transformation T2 on the image one after another, then the transformation should be composited as T1◦T2, right? Please refer to...
Recently, MacOS/clang started producing errors on the elastix CI (both GitHub Actions and Azure Pipelines), saying: > fatal error: 'omp.h' file not found Discussed at ITK [MacOS GitHub Actions, Azure...
Suggested by Bradley Lowekamp (@blowekamp) at "WIP: Support adding Elastix component by CMake SimpleITK_USE_ELASTIX=ON" comment https://github.com/SimpleITK/SimpleITK/pull/1611#discussion_r848584729 referring to https://github.com/SimpleITK/SimpleITK/blob/2681d0689a5922a7f2d1b56b1c7b62361eed9d8d/SuperBuild/External_ITK.cmake#L81-L83 Discussed with Marius Staring (@mstaring) at superelastix.slack.com #elastix Aims to avoid...
I tried [2d-3d registration](https://github.com/SuperElastix/ElastixModelZoo/tree/master/models/Par0013) and have quite a few naive questions: First, while the 2d fixed image is "front view", the registered image is "side view". Is it an expected...
