StickHu

Results 5 comments of StickHu

db_sort: unable to mmap database.jdb: Invalid argument

I faced the same problem. Have you solved that?

Building a microbial nt database

Hi, have you solved the problem？

Error in GFFParser: UnknownSeq is deprecated in biopython 1.81

So how can we correct the code to use?

Option to Skip the AMR detection step

Same problem here. I've using the command line 'amrfinder_update --force_update --database /data/workdir/huwa/annotation/bakta_annotation/db/amrfinderplus-db' But it failed with that *** ERROR *** CURL: Cannot read from https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinderPlus/database/ code=6 error: Could not resolve...

OSError: AF_UNIX path too long

I just met the error, try to remove the parameter --tmp_dir and it will succeed