Yan-Feng Song

Issues related to the interpretation of the results of TEanno.gff3 and TElib.fa

1

Hello！ In TEanno.gff3, TE_00000019 actually has multi-locus repeats on each chromosome, so do these TE_00000019 need to be merged and spliced again? Or do these transposons already contain the full...

The relationship between the location of Mutator transposons and exons

3

We've observed that Mutator transposons annotated by RepeatMasker often overlap with part of the exons in a gene, meaning the exons frequently become part of the internal sequence of Mutator....

Differences in results between versions

1

Hi, rmhubley The results of version 4.1.5 (Dfam 3.7) compared to version 4.1.3 (Dfam 3.6) for the same species clearly have a higher proportion of the former masked, is this...

About pool sequencing population genetic data

2

Hello, I'm a beginner in population genetic data analysis, and I don't quite understand the concept of pool sequencing. For example, I currently have BAM files for multiple populations of...

nextflow error

7

executor > local (4) [6f/512ff1] check_input (1) | 3 of 4, failed: 3, retries: 3 [- ] omamer_run - [- ] infer_roothogs - [- ] batch_roothogs - [- ] hog_big...

How to calculate the allele frequency spectrum of a mixed ploidy population from a VCF file?

4

If I am calculating the allele frequency spectrum for a mixed ploidy group from a called VCF file, how should I set the parameters?