Solyris83

Forcing chromap to output ALL result

2

Hi, is there any way to force chromap to output all the unmapped and multi-mapped reads? And how are they identified? It was mentioned in issue 20 that multi-mapped reads...

regenotyped samples produces all Genptype (GT) with ./.

8

Hi, I have regenotyped 9000+ samples and gotten a small set of 72 samples with all genotype (GT) results to unknown (./.) The other 9000 samples have around 2400 structural...

WHAMG analysis runs with Illumina DRAGEN 3.7.6 cram output producing empty VCF files

1

Hi, as said in the topic. We are testing WHAMG on 1KGP OpenAccess data which has been reprocessed with DRAGEN 3.7.6 found in https://aws.amazon.com/blogs/industries/dragen-reanalysis-of-the-1000-genomes-dataset-now-available-on-the-registry-of-open-data/ We tested on 63 samples with...

Population scale merging with Jasmine for short-reads

2

Hi, We are intending to test out Jasmine for a population based experiment with more than 10k sample WGS with Illumina short-reads (SR). We are doing a test-run on 3202...