Simon Kit Sang Chu
Simon Kit Sang Chu
How can I run alphafold on `seq_mask`, `msa_mask` and `msa_row_mask`? In alphafold training, msa are masked *randomly* but I am seeking to implement custom masking. Here is what I have...
Following the tutorial on [SVDKL on CIFA10/100](https://docs.gpytorch.ai/en/stable/examples/06_PyTorch_NN_Integration_DKL/Deep_Kernel_Learning_DenseNet_CIFAR_Tutorial.html), I am still not sure how to implement SVDKL on a simple MLP feature extractor with `GridInterpolationVariationalStrategy`. In particular, what input does `GridInterpolationVariationalStrategy`...
A dynamical system can often be described not by a single tensor but by multiple ones. For example, a system of particles can have node features, edge features, and global...
I followed the installation instruction on anaconda but receive an error on `fastfold_softmax_cuda`. The machine has cuda version 11.6.2 installed. ``` Colossalai should be built with cuda extension to use...
## Expected Behavior I wish to have multiple cluster runs, each with a different value of min-seq-id value. Ideally, the resultant representative form hierarchical subsets, i.e. representative sequences for min-seq-id...
No module named `attn_core_inplace_cuda` was found during inference on A100. Preinstalled CUDA 11.6 outside of conda. ``` Traceback (most recent call last): File "run_pretrained_openfold.py", line 21, in from openfold.utils.script_utils import...