Sichao25

Thanks for reporting the issue. Your guess is correct, `dynamo.vf.vector_field_function` is the vector field function. The docstring has not been generated correctly. I will add it soon. Actually, we have...

`VectorField` will automatically store the result to the given AnnData, but I feel like this might not work when given a view like `adata[:,adata.var.use_for_transition]`. Could you try to set the...

You may be able to do that by setting `transition_genes=adata.var_names`. Index is preferred instead of boolean value.

Hi, sorry for that the link does not work. Could you specify which tutorial you are talking about? All tutorials on the read the doc should have a colab link...

I see. We'll make sure to update the link shortly. You can find the Colab link right at the top of any tutorials (for example, [zebrafish tutorial](https://dynamo-release.readthedocs.io/en/latest/notebooks/zebrafish.html), corresponding [Colab](https://colab.research.google.com/github/aristoteleo/dynamo-tutorials/blob/master/zebrafish.ipynb)) on...

Hi, we just updated the sample data url in this [pull request](https://github.com/aristoteleo/dynamo-release/pull/577). Please let me know if any of these URLs don't work.

Hi, thank you for raising this issue. This looks like a bug when setting the alpha back to the original data. I will take a look at it. But I...

Hi, thanks for using Dynamo. We appreciate your feedback and contribution. Just from the error message, it looks like Scipy fails to solve the initial value problem correctly. Your code...

I see. At first, I successfully run the code on perturbed sample data. After spending some time fine-tuning the parameters, I reproduced the error you mentioned. It seems that the...

When you mention "quantifying the GIF in a static image," are you referring to generating an image showing all the trajectories present in the animation? The GIF itself is actually...