Shweata N. Hegde

## Create a software dictionary - From https://w.wiki/5FAZ ## Build a sub-set of papers that are in Wikidata - From https://w.wiki/5FAR - Script to get unique PMCIDs out: https://colab.research.google.com/drive/1Kw7XDSce2s_EfzZIEkaIVM4yfunmKZvp?usp=sharing ##...

I've mined the full text for software mentions. Here's the CSV output: https://github.com/petermr/docanalysis/blob/main/resources/software_mentions.csv You can find the Notebook I created here: https://colab.research.google.com/drive/1Kw7XDSce2s_EfzZIEkaIVM4yfunmKZvp?usp=sharing I haven't added documentation, yet.

I realized that `.csv` was limiting since the lists in the `has_terms` column were actually turned into strings. I have now added a method to output the results in `JSON`...

> Here is the [list of QIDs](https://gist.github.com/carlinmack/c35ffd8099707c20121ff51b3fc51683#file-qid-doi-csv=) from the DOIs from the IPCC report. The script takes 2 mins to run and is above on the same page > >...

Thanks so much :)

I tried what you suggested: ``` PS C:\Users\shweata\Dockerfile> docker run -it paper_getter -v results:/results \ >> getpapers -help v14.10.1 getpapers : The term 'getpapers' is not recognized as the name...

- So I ran the following command: ` docker run -it paper_getter getpapers -q viral epidemic -k 10 -o C:\users\shweata\viralepidemicstest1 -p` And this is what I got: ``` C:\Users\shweata>docker run...

I found a StackOverFlow solution for this. https://stackoverflow.com/questions/46850562/how-to-query-wikidata-for-also-known-as Here is an example: ``` SELECT ?compound ?compoundLabel ?compoundDescription (GROUP_CONCAT(DISTINCT(?altLabel); separator = " | ") AS ?altLabel_list) WHERE { VALUES ?compound {...

https://colab.research.google.com/drive/1sFj07mE2XRyeaplvsTs34-VaDHBjnt6U?usp=sharing Ayush (openVirus volunteers) and I wrote a piece of code that can extract common phrases from a text file with manually scraped Ethics Statements.