Shubhra

Cholmod error 'problem too large' at file ../Core/cholmod_dense.c, line 102

2

This looks like a recurrent problem where sparse matrices cannot be handled. Any suggestions?

Hello, I have 7 samples which I first merge into single object. ``` mut1_h5 Assays > Execution halted > When I print ``` Assays(merged_object) Layers(merged_object) ``` I get > Slot...

Doubts regarding cell state and cell label; log transformed input

1

Hi Thanks for developing this. 1. I have a basic doubt regarding what cell state and cell label means. So, per my understanding cell label means what cell it is...

AttributeError: module 'cooler' has no attribute 'fileops' while converting cool to h5

1

Hello, I am trying to convert cool to h5 format using hicConvertFormat. I have an mcool file from which I have already extracted my resolution using `cooler dump --join ../test.iced.mcool::resolutions/10000...

Hi, Thanks for your effort making this. I have been looking into the package and trying to evaluate how different the results are when using conventional pseudo-bulking + standard DEG...