DoAbsolute

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Error: the condition has length > 1

1

HI, I tried running the example as written, but keep getting the following: > Setting results directory as /home/comp/data/ -> Removed previous error log file. -> Loading segmentation data... ->...

neuro30

some problem about Genome doublings

3

Dear Shixiang, thank you very much for creating a useful wrapper to run Absolute. However, I found there may be a problem on colunm "genome doubling" in the final table...

LongpanICR

Error when run DoAbsolute in allelic mode using example data.

3

Hi. I've run DoAbsolute utilizing the example data. Here present the code. ``` example_path = system.file("extdata", package = "DoAbsolute", mustWork = T) # segmentation file seg_normal = file.path(example_path, "SNP6_blood_normal.seg.txt") seg_solid...

lincj1994

报错相关问题error protect protection stack overflow

2

作者你好，你给的例子中只有3个样本，使用该包可以正常出结果，但是样本涉及几百个的时候，会报错error protect protection stack overflow，请问您在实际应用过程怎么解决这个问题呢

liudanmai11

运行测试文件报错

4

.----> Error detected, see log for more details. --> Processing sample TCGA-DK-A1A6-06 ... [1] "Capping 1 segs at tCR = 5.0" [1] "Expected copy-ratio = 1.01838" [1] "Removing 0 of...

AilingZhong

WGD

1

你好，我想问一下ABSOLUTE里如果没有HAPSEG文件，他是不输出等位特异性CNV的，那他是如何判断WGD的，我看到示例里面有输出Genome doublings，但似乎与倍性也不怎么匹配

yzhwzh