ShixiangWang
运行测试文件报错
.----> Error detected, see log for more details. --> Processing sample TCGA-DK-A1A6-06 ... [1] "Capping 1 segs at tCR = 5.0" [1] "Expected copy-ratio = 1.01838" [1] "Removing 0 of 318 mutations with NA coverage" [1] "Removing 0 of 318 mutations due to allelic fraction < 0.1" [1] "Removing 0 mutations in IG regions" [1] "Removing 29 unmapped mutations on Chrs: " [1] 17 8 17 7 17 17 17 4 15 17 17 9 17 17 17 1 17 17 17 17 17 1 17 22 12 [26] 17 12 11 17 .----> Error detected, see log for more details. -> RunAbsolute done. Retrieving results... --> Files in cache directory: [1] "tmp" -> Checking result files... Warning in DoAbsolute(Seg = Seg, Maf = Maf, platform = "SNP_6.0", copy.num.type = "total", : --> Result file /tmp/RtmpaXB2Tx/Absolute/cache/TCGA-DK-A1A6-10.ABSOLUTE.RData does not exist, drop it. Warning in DoAbsolute(Seg = Seg, Maf = Maf, platform = "SNP_6.0", copy.num.type = "total", : --> Result file /tmp/RtmpaXB2Tx/Absolute/cache/TCGA-DK-A1A6-01.ABSOLUTE.RData does not exist, drop it. Warning in DoAbsolute(Seg = Seg, Maf = Maf, platform = "SNP_6.0", copy.num.type = "total", : --> Result file /tmp/RtmpaXB2Tx/Absolute/cache/TCGA-DK-A1A6-06.ABSOLUTE.RData does not exist, drop it. Error in DoAbsolute(Seg = Seg, Maf = Maf, platform = "SNP_6.0", copy.num.type = "total", : No result file to proceed.
不好意思，请教您这个报错： 我在运行自己的maf文件和seg文件时，出现了以上报错，换成包自带的数据，也有以上报错；加之最近看到absolute的原下载页面被关闭了，是旧的版本出了问题吗？
install.packages("numDeriv")
path_to_file = system.file("extdata", "ABSOLUTE_1.0.6.tar.gz", package = "DoAbsolute", mustWork = T)
install.packages(path_to_file, repos = NULL, type="source")