Shian Su
Shian Su
The color picker currently has a text cursor when you hover over it. I've changed this to a `cursor: pointer` style, now it should be more obvious that the color...
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I helped a colleague debug an issue with nanopolish call-methylation, whereby a BAM file with no spliced alignments would be detected as having a spliced alignments, leading to the program...
I am using nanopolish to call methylation. As far as I can tell `nanopolish index` indexes the entire contents of a fast5 folder and a single fastq file. So for...
(In reference to #75) * Added argument `percentMode = c("total", "parent")` to allow percentages and counts to be shown relative to the parent element rather than of the total. *...
I would like to suggest a `percentMode` options that has options `c("total", "parent")`. Under `"total"` the percentage will be as it currently is, but under `"parent"` it should show the...
At least for me autoreconf is expecting `~/tmp` and `./m4` to exist otherwise it'll give errors. Maybe add an empty `./m4` folder and add a note to the installation instructions...
Currently `sc_trim_barcode` does not recognise out of bounds indices, so if we wanted to take bp10-20 from a 8bp long read we just have an empty barcode or UMI. This...
So currently we handle GRanges to SAF conversion. But I haven't really looked at GRangesList that many people use. There is a toSAF function in `ensembldb` that may make life...
If someone installs scPipe without having readr already installed then `create_report()` will fail. EDIT: plotly, DT, scater and scran are also required.