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                                            ShawnSimp

Error: Tree building failed

@imdanique Hi was a solution found for this error? i am experiencing the same issue.

Command Failed: bcftools

Currently dealing with the same error and issue where the pipeline hangs, after bcftools consensus command fails. I ran it manually and got the same error and an empty consensus...

bcftools consensus -f ./output/nCoV_2019_midnight_V1_WS_sample_RB06_medaka/WS_sample_RB06.preconsensus.fasta ./output/nCoV_2019_midnight_V1_WS_sample_RB06_medaka/WS_sample_RB06.pass.vcf.gz -m ./output/nCoV_2019_midnight_V1_WS_sample_RB06_medaka/WS_sample_RB06.coverage_mask.txt -o WS_sample_RB06.consensus.fasta

ValueError: Error when checking input: expected input_1 to have 4 dimensions, but got array with shape (0, 1)

Hello, was solution for this error found? i'm currently dealing with the exact issue.