SergioRodLla

Highlight color alpha differs between tracks

2

Hi @PoisonAlien , Thank you for this fantastic tool! I wanted to highlight a specific region of the track plot but it seems like the box color alpha value is...

Interpreting the outputs of the function TSSEscore() comparing to the reference from ENCODE

5

Hello, First of all, thank you for developing ATACseqQC. I am having troubles interpreting the outputs of the function TSSEscore(). I am using the TSSE score definition used in [ENCODE...

TypeError: STUNetTrainer_huge.build_network_architecture() takes from 4 to 5 positional arguments but 6 were given

6

Hi Ziyan, I tried to finetune your pretrained huge model on my multi-modal dataset using **nnUNet v2** framework like this: `CUDA_VISIBLE_DEVICES=0 python nnUNet/nnunetv2/run/run_finetuning_stunet.py 500 3d_fullres 0 -tr STUNetTrainer_huge_ft -pretrained_weights STU-net/models/huge_ep4k.model`...

Fine-tuning models with nnUNet v2 using multimodal data

1

Hello, Thank you very much for the repository and the provided pretrained models. I have seen that you added some scripts for nnUNet v2 to run fine-tuning as well as...

Hello, First of all thank you for this amazing framework. I have a particular case where I want to run inference in a model that was trained outside the nnunetv2...