Sergey Potapov
Sergey Potapov
Dear developers, thank you for the program. I have one question: It always downloads the latest available version of the refseq from the file assembly_summary_refseq.txt? Now 214.
* pharokka version: 1.6.1 * Python version: Python 3.10.8 * Operating System: Ubuntu 22.04.3 LTS ### Description Dear Developer! Could you clarify please. What does this error mean? ``` 2024-02-01...
Dear developers! Thanks for the program. Is it still supported? The program lacks an inscription about with genomes to distinguish them (for example, when there are several of them). And...
Dear developers. Could you clarify please. Why is the group Extended_partial based on checkV results circularized (with DTR)? Can I take these sequences as putative complete genomes?
The program is cool, but the description unfortunately suffers. Dear authors, Could you clarify please. When was the last time the database at this link was updated? [db.zip](https://drive.google.com/file/d/1jTo2e5UQLkEItRrgTJhOhXZAAUV-ACd7/view?usp=sharing )
Dear authors, I find it difficult to run the program without knowing python. How can I run a similar command with the pyhmmer and extract only the best bit score?...
Dear colleagues, have you tried optimizing the parameters of the program for calculating AAI for viral genomes? To what extent is this possible?
Dear developers, thank you for the program. It looks promising judging by the article. But I am interested in a detailed manual of various settings. I have a routine task...
Dear authors, what does the abbreviation "pdg" stand for? For example, in all.pdg.faa. As I understand, this file contains all predicted ORFs from the input file, correct? Does VirSorter2 generate...