Sergey Knyazev comments

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                                            Sergey Knyazev

Proposed Steps for Evolution Manuscript Submission

Sure, I can help with that. Thank you! On Wed, Apr 27, 2022 at 1:53 PM Ronan Lordan ***@***.***> wrote: > I just see you suggested paths to submission, a...

New Paper (Other): Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa

Hi Dr. Rando, Sure, I will work on this topic during the weekend. Then we can start some editing. Thank you! Sergey On Fri, Jan 8, 2021 at 1:04 PM...

-t and -tf parameters

Dear Andrea and Javier, These two parameters work similarly, however, -t is crucial for genome fragments with low coverage and is required for reliability of detection of SNV pairs. The...

-t and -tf parameters

Hi Andrea, To get the mutations, you could use --snv-illumina-vc option. But take in mind that it calls the mutations that appear in the same reads simultaneously by pairs (see...