Sébastien Dumas

TypeError: 'NoneType' object does not support item assignment - binarize_topics() function

5

Hi, I made a cisTopic object in Python importing the fragment count matrix from a Signac object (cell x peak matrix) and a selected cisTopic model pre-computed in R. When...

run_pycistarget() starts but never delivers results (local run)

4

Hello, Very excited with the Scenicplus package. I am trying to finalise processing of my cistopic objet but I have an issue for the run_pycistarget() step. Here is the code...

Error in topic binarization after topic modeling with polars_1xx branch

1

Hi, I used the polars_1xx branch to run models, which worked well, but then I get the following error when I attempt to binarize the topics with "3k" and "otsu"...