Sean LeRoy
Sean LeRoy
We were requested we move off of the old AWS account onto a new one. We currently use the old modeling account to store test files used in the unit...
I came across this mention here where [this package states it does not support FlipX, FlipY, & SwapXY](https://github.com/nimne/readlif/blob/master/README.md?plain=1#L31). I've been working on [improving the LIF reader for another package](https://github.com/AllenCellModeling/aicsimageio/pull/480) which...
[See the original issue here for more information](https://github.com/AllenCellModeling/aicsimageio/issues/420) from aicsimageio. In short, it would be useful in some use cases to provide more information about what `BioImage` (previously `AICSImage`) is...
### Describe the Bug The first and third tests which are commented out [here](https://github.com/bioio-devs/bioio/pull/9/commits/8552a3c910e2a299f86ebe62e6dd75318532158a#diff-4a26e04cac22023b008db8ba21a4361dbc31343d9e4e708aa09d9818d80cb0cc) (on `test_timeseries_writer `) fail when uncommented because the data array created has inconsistent shapes for the...
Support `conda` for `bioio` and probably all the plugins too (bioio-base, bioio-ome-tiff, etc.) [See original issue here](https://github.com/AllenCellModeling/aicsimageio/issues/312) in aicsimageio by @toloudis
[Previous discussion and original description are here](https://github.com/AllenCellModeling/aicsimageio/issues/452). In short this issue is to add units to the `PhysicalPixelSizes` NamedTuple returned by the `physical_pixel_sizes` property on `BioImage` and the readers. Thus...
## Description `aicsimageio` has been deprecated in favor of `bioio` there should be a warning highly visible on the README mentioning as much
Support .zarr v3 - this is a placeholder issue for tracking/planning purposes. Details and sub-issues to come.
Only OME file types are currently very easy to read through the rest are usually in XML format which can be difficult for some users to parse. We have found...