Sam Nicholls

Just a place to track stuff that isn't very nice * Implementation of Metric form_handlers (this should be rolled out to a per-metric function) * The collected_by and collection_org fields...

Data view caching

1

With the desire to EOL the elan metadata file, it would be best to have the API cache any queries that return very commonly requested data before spawning a celery...

resty tracking issue

2

* [ ] update v3 to use new institute credits - eventually migrate default credit to same system * [x] check the actual mdv permission as well as the permission...

Cannot pipe a tree to `seq-gen`

3

It is not possible to echo a string into `seq-gen` to use as a tree: ``` $ echo "(A:0.1,B:0.1,C:0.1);" | /home/sam/ware/Seq-Gen.v1.3.3/source/seq-gen -mGTR Sequence Generator - seq-gen Version 1.3.2x (c) Copyright,...

`nextflow config` unexpectedly writes debug logging to stdout when not using tty

5

## Bug report ### Expected behavior and actual behavior **Expected** `nextflow config` should yield a valid nextflow configuration and not care about my tty. **Actual** `nextflow config` can write debug...

Currently, Abricate will exit successfully regardless of the exit code of the BLAST command. This is misleading as failures in the BLAST command (eg. if it is killed by the...