Saim Momin issues

Results 21 issues of


                                            Saim Momin

Added few new functionalities to DIAMOND tool

Following functionalities are added to this PR `--swipe` Performs exhaustive alignment against all database sequences `--soft-masking `Performs soft-masking using softmasking either of method (none=default, seg, tantan) `--index-chunks` Memory utilization functionality...

Updating the ReadTheDocs

Hi, Thanks for rolling out a new release of `pairtools` v1.1.0. Upon reviewing the changelog provided for this release (https://github.com/open2c/pairtools/releases/tag/v1.1.0/)), I noticed alterations to the behavior and default settings of...

Diamond view throws segmentation fault (core dumped) error

Hi, I have a Diamond DAA file (ultimately small in size) which was the ouput from Diamond blastx tool using the lastest version. When I try to convert the DAA...

Updated .shed.yml for ERGA EAR tool

Hi, I realized there was a small mistake in the `.shed.yml`. I have fixed it in this PR. Thanks!

Mitohifi fix

Based on the issue reported https://github.com/bgruening/galaxytools/issues/1454 the current PR deals with adding of an additional parameter -a to the mitohifi tool for organism selection

Updating the test data for tools/cellpose

This pull request updates the test-data for cellpose tool for an existing PR https://github.com/bgruening/galaxytools/pull/1494 and fixes https://github.com/bgruening/galaxytools/pull/1494

Updating tools/augustus to 3.5.0

This PR updates the Augustus tool with addition of new species and updates to the test data Fixes: https://github.com/galaxyproject/tools-iuc/pull/6433 --- FOR CONTRIBUTOR: * [x] I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document...

Saim Momin