Sabrin2020

no abyss-pe.Makefile acess denied

6

**error after running my data with abyss-pe using slurm script, test data works fine** **- [ ] version of ABySS with `abyss-pe version`** abyss-pe (ABySS) 2.3.5 **- [ ] distribution...

combining krakenuniq reports

2

Is this scripts could be working with krakenuniq reports? If yes how to fix it please combine_kreports.py -r *-krakenuniq-report.tsv -o COMBINED.KREPORT --display-headers >>STEP 1: READING REPORTS 1/301 samples processedTraceback (most...

extract_kraken_reads.py accept bracken reports?

2

Hi Team, Could extract_kraken_reads.py accept bracken reports too? As I have up to 40% of reads as unclassified by kraken, I do not not want to loose info in those...

ERROR: database150mers.kmer_distrib does not exist

2

Okay , i ran braken-build but get error, anz hint please what is wrong? ``` bracken-build -d kraken.NCBI.nt -t 32 -l 150 -x kraken.NCBI.nt -y kraken2 bracken -d kraken.NCBI.nt -i...

defining an output file

7

Hi all, I have difficulty defining an output file for my relative abundance run, any hints please what am I missing here? ``` coverm genome --genome-fasta-extension fasta --genome-fasta-files *.fa \...