SZ-qing
SZ-qing
Yes, I also encounter this error when I run the mouse model, it seems to be the error of converting mouse gene to human gene.
I now have an alternative solution to this problem. step 1: Using R packet progeny to obtain model data used by decoupler > library(progeny) > model_data write.table(model_data ,'./progeny_mouse_geneset.txt')` > step2...
I used the method you mentioned above.I don't know if other people's problems have been solved, but my problems still exist. >>> , 'NoneType' object is not iterable, Traceback (most...
When i add ref-paths, the results is not be changed: ```vg giraffe -Z hprc-v1.1-mc-grch38.gbz -p -f ./small_sim.fq -o json --max-multimaps 10 --ref-paths ./all_graph_paths.txt >small_sim_aln_M10_allpaths.json```
Or can you tell me the version of python, tensorflow you need?
What was the anndata version of the h5ad file that you created? Or the scanpy version, because I can't read the h5ad file you provided right now. my packages version:...