SMScottLee
SMScottLee
Hi ofgulban, Thanks for your suggestion and it seems to work well! But I still have questions about the following steps. After the conversion and using LN2_LAYERS to label different...
Thanks for the suggestions. I'll watch them. The final layer fMRI profile I mean would be like the first figure on the website I posted above, with the x-axis from...
Hi @ofgulban , Thank you so much! All the materials are very helpful and I'm following through them. I currently have the equivol_metric file, contrast images generated from SPM, and...
Yes, you are right. The dimensions of my aseg_rim_metric_equidist file are 320x320x320, but contrast and ROI files are 157x189x156.
Hi @ofgulban , The previous contrast and ROI files have been normalized to a template. But the unnormalized ones also have different dimensions (240x234x54), because of different FOVs and resolutions...
Thank you! I attach my rim file (aseg_rim.nii.gz), equivol_metric file (aseg_rim_metric_equidist.nii.gz), scalar map (con_0002.nii.gz), and ROI mask (rFFA_FWE05.nii.gz). [aseg_rim.nii.gz](https://github.com/layerfMRI/LAYNII/files/12004396/aseg_rim.nii.gz) [aseg_rim_metric_equidist.nii.gz](https://github.com/layerfMRI/LAYNII/files/12004397/aseg_rim_metric_equidist.nii.gz) [con_0002.nii.gz](https://github.com/layerfMRI/LAYNII/files/12004502/con_0002.nii.gz) [rFFA_FWE05.nii.gz](https://github.com/layerfMRI/LAYNII/files/12004503/rFFA_FWE05.nii.gz)
I've resliced the metric_equidist file (attached) into the same dimensions as scalar map and ROI. [aseg_rim_metric_equidist_reslice.nii.gz](https://github.com/layerfMRI/LAYNII/files/12015048/aseg_rim_metric_equidist_reslice.nii.gz) The script for scatter plotting now works but I'm not sure the result is...
Hi @ofgulban , Thanks for the explanations and the two videos. They are very helpful! Yes, the statistical map was smoothed with 8mm FWHM to define ROIs. I'm now using...
Hi @ofgulban , Thanks! I've smoothed the layer file and would like to plot layer profile of the smoothed image. However I got an error File "01_layer_profiles_scatterplot.py", line 43, in...