Ruibin Liu

Reimplement Bio.SeqUtils.ProtParam.flexibility as per literature

16

For a sequence of length `L` and a window size `W`, the number of flexibility scores we can calculate is `L - W + 1`, not `L - W` as...

[Doc] Update math_module.md

3

Make code comments more accurate and consistent. Issue: # ### Brief Summary ### 🤖 Generated by Copilot at b26c0ba Improve math module documentation by clarifying and formatting vector and matrix...

Residues are not recorded correctly

1

An example is `3CBJ` chain `A`. It begins as `{'57P': 'PHE', '58P': 'THR', '59P': 'GLU', '60P': 'ASP', '61P':'LEU', '62P':'LYS', '1': 'LEU', '2':'PRO', ...}`. `P` is the insertion code but the...

How to force the PDF page orientation?

1

From my understanding, camelot automatically detects the page orientation and then uses that to detect the table locations and orientations. However, some PDF docs can have normal page orientation but...

Supporting SMILES str or rdkit Mol object in the `MainWindow` class

3

Currently, we can use `MainWindow` in custom code but the class only support empty or file_name argument. I looked through the code briefly and thought it would not be too...