Stephen Tanner

Speed bottleneck: Avoid re-parsing bam header when reading many intervals

4

I've got come code which parses many intervals from a bam file, with calls to the ParseRange() method. The results are correct, but slower than expected. Reading through the source...

BamParser.Parse() returns null objects in rare instances

2

Today I used dotnetbio to parse a bam file. In rare instances (for a total of 3 reads out of 1 million), BamParser.Parse() returned a null object rather than a...

Website social links - Upgrade twitter link to BlueSky link

1

Each page on itch.io links to twitter/X, using the obsolete bird logo. Given the disinformation, harassment, and divisiveness of twitter these days, linking to it from a website has become...