Rikkiff

Results 7 comments of Rikkiff

Error in if (abs(max.ES) > abs(min.ES)) { : missing value where TRUE/FALSE needed

Dear all, I am a newbie to bioinformatics, and am running into the same issue when doing GSEA as described in this tread. Now and then I will get the...

read_seqs() function not working for me

Dear Markus, Thank you so much for your reply. When I run read_seqs(ex("emales/emales.fna")) the result is an empty tibble with four columns. Same thing happens when I run the function...

read_seqs() function not working for me

> I think that I found a way around it. Instead of read_fasta, I used read_fai on the .fai index of the fasta file, and I get the required tibble,...

Changing start site of seq track and keeping layout.

Thanks Thomas! Actually, I want to change the start site of the sequences. So, for example that all sequences are starting with the MCP gene you are centring on in...

Changing start site of seq track and keeping layout.

This works. Thanks again Thomas!

Cannot find mob-typer accessions on NCBI

Thanks Kirill! The nucleotide has three replication proteins, so how did you deduce which one is 002374__CP004064_00076?

Cannot find mob-typer accessions on NCBI

Thanks again Kirill! It would be a lot easier if the accession AGE31365.1 was given directly instead of 002374__CP004064_00076. Also, where did you find the sequence of 002374__CP004064_00076?