Rhopala

@hsun3163 This is for solving another headache. I am not sure if you know there once was a too-long-command problem: R R have an input length limit and the psichomics...

@gaow Yeah I'll add comments for that problem

Description of the question in included in the file mapping notebook: [WGS_file_mapping.ipynb](https://github.com/cumc/brain-xqtl-analysis/blob/main/analysis/Wang_Columbia/genotype/WGS_file_mapping.ipynb) - First, Duplicates exist in both synapse metadata rna-Seq and synapse metadata WGS, i.e. multiple rna-Seqs or multiple...

After testing we found the `Aligned.byCoordinated.bam` files are actually impacted. Only tiny differences are observed in the bamfiles such as:  The intron usage ratio could have a ±1 for...