Andrea Talenti
Andrea Talenti
Good morning, I've generated a cactus pangenome graph described in issue #3550. The workflow is the latest version, and uses vg v1.37.0. I'm now trying to genotype the samples using...
Hi, I've just installed xpclr in an anaconda environment using the command specified. However, when I try to run it on a file generated with vcf_to_hdf5, I get the following...
Hello, I'm trying to run princess on a single node using a total of 24 cores. When I run the task using the command: ``` princess all -f reference.fa -j...
Good day, I'm currently working on the assembly of a large mammalian genome. I would like to perform the reference-assisted scaffolding using ragout. However, I cannot run progressive cactus on...
Hello, I'm trying to compile the code using a local installation of `libdivsufsort` without success. I've proceeded compiling the library as follow: ``` git clone https://github.com/y-256/libdivsufsort.git cd libdivsufsort mkdir build...
Hello, I was wondering if it would be possible to release the package also as an anaconda package, so that it can be installed into local anaconda environments? I'm asking...
Hello, I need to create an anaconda environment using the compiled tools in this repository. I'd like to know if it is possible for me to create an anaconda package...
Dear vg team, since I need to build hal2vg, I've been trying to build vg from sources. I've been following the guide provided, installing all the dependencies on ubuntu 16.04....
**Describe the bug** When annotating BND SVs calls, the ALT allele gets converted to upper case: ``` $ zcat input.vcf.gz | grep 'BND' | head -1 chr1 16680842 r_2_0 C...
Hello, I've just tried to run peregrine on a set of hifi reads for a large mammalian genome. The software finished successfully, but I can't find an explanation of the...