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RNAcentral
RNAcentral website source code
This does several things: - Move accession column out of rnc_sequence_features, to work better with storing Rfam hits and corrects the representation of the features. - Rename rnc_sequence_features_id to rnc_sequence_feature_id....
Hello, I'm currently trying to retreive all human lncRNA sequences via text search through here: https://rnacentral.org/search?q=RNA%20AND%20so_rna_type_name:%22NcRNA%22%20AND%20TAXONOMY:%229606%22%20AND%20so_rna_type_name:%22LncRNA%22 The site retrieved them all right, but I'm trying to download the fast file...
This issue is to track databases which could be good to import. We should review this issue each release to pick new databases. Additionally, whenever and interesting database is found...
We should add the ability to edit any r2dt diagram on RNAcentral. This can work by adding a button to each diagram that: 1. Submits sequence to R2DT (https://rnacentral.org/r2dt) 2....
[lncAtlas](https://lncatlas.crg.eu) has some good information on localisation in some different cell types. We should link to it. Ideally we should be able to link to the plots it creates but...
Once the the database is updated, we should update the search index so the widget works once we remove old 2D's.
We should tweet and write a short post about the udpated R2DT. Would be good to have some stats and examples of the changes.
Once we have computed all the new layouts we should remove any old layouts. We can find this by comparing the hits in rnaprod rnc_secondary_structure_layout vs the web production (or...
It should be possible to map RNAcentral URS ids to other sequence identifiers (Ensembl transcript ids, etc) and vice-versa. This is a bit tricky depending on the mapping desired. There...