Qtasnim

> I have got what I want with the following code adapted from dotplot(): > > gene_ids = adata.raw.var.index.values clusters = adata.obs['louvain'].cat.categories obs = adata.raw[:,gene_ids].X.toarray() obs = pd.DataFrame(obs,columns=gene_ids,index=adata.obs['louvain']) average_obs =...

Hello @viktorfeketa, I am having the exact same problem, specifically with Astrocytes and Glutamatergic annotation! Did you find out the reason for this problem? or maybe the solution? Thanks.