Qirong Mao

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Basis matrix is different for the same snRNA-seq but different spatial samples

Thanks for your reply! In our case, we do notice that some genes are removed in some of our samples even though they are highly expressed and regarded as the...

Spatial LIANA x cell2cell analysis in R

Hi Daniel, Thanks for the quick response :) We have Visium data in different groups, and we also have the annotation for spots in all the samples. Best, Qirong

Memory exceeded when running single cell data alignment

Hi Andrew @andrewprzh , I'm running IsoQuant on the Visium dataset with only 5K barcodes. Technically, it should not require much RAM, right? I was wondering if there might be...

Memory exceeded when running single cell data alignment

@andrewprzh Hi, in this Visium dataset we have 3700 cells (spots)