Paul Roginski

with bedtools slop "* Input error: Chromosome XXX **doesn't** present in the .genome file. *" Thanks for the tool !

split results

7

Hi, **Is your feature request related to a problem? Please describe.** As the last release of the human genome, with its ~145k CDS produces a 630Go results, and as the...

v1.4.0 : no tmp .bout files

3

Dear genEra developers, **Describe the bug** The CDS of A thaliana I am using, won't be dated. I already succeded using genEra v1.4.0 with a subset of H sapiens' CDS...

-a option : can we concatenate custom output with precomputed blast against nr ?

2

Hi, I mentioned it in a comment but it seems better to make a proper question with it : Let's imagine I launched genEra on a single proteome (-q ),...

Following this message : " geom_NewGeomTile() has yet to be implemented in plotly. If you'd like to see this geom implemented, Please open an issue with your example code at...

Constrained topology for ancestral reconstruction

1

Hi, I have a gene (CDS) and its orthologs from 5 other species.  Using PRANK, I try to retrieve the ancestral sequence that corresponds to the node...