Phylloxera

Preprocessing tutorial: plot X-Y scale defaults inappropriate for Waters data?

2

  Hello, I'm not really sure if my title describes the underlying issue... I'm looking over issues [430](https://github.com/sneumann/xcms/issues/430) and [451](https://github.com/sneumann/xcms/issues/451) and centwave parameter definitions [here](https://github.com/cbroeckl/csu.pmf.tools/blob/master/R/pmf-xcms_new.R) for downstream steps... but...

%appinstall <app> -c /bin/bash is maybe not like %post -c /bin/bash

1

**Type of issue** unsure: syntax or version or incompatibility or environment **Description of issue** I'm trying to integrate virtual environments (like [here](https://github.com/apptainer/singularity/issues/2587)) with SCI-F Apps as suggested [here](https://github.com/apptainer/apptainer/issues/1467)). SingularityCE version...

max rho higher than 100?

1

Hello, I have some less well characterized lentivirus genomes… so not HIV, but still anticipate (and see) high recombination. The question is ‘how high?’ Thus ldhat to estimate… simple, right?...

Hello, Despite the claim [here](https://www.bioconductor.org/packages/release/bioc/vignettes/IPO/inst/doc/IPO.html) that only obiwarp and density are supported for optimizing RT correction and grouping, issue #36 and others suggest that is no longer the case. I...