Gran Young
Gran Young
我知道，但就是觉得有点别扭哈哈
Thanks for your response! Let's make annotation great again! LOL Best, Guang
HTSeq recently just released its new version 0.7.1 and fixed some bugs. You might try HTseq---DESeq2 for downstream analysis after alignment with hisat2. Yours, Guang
@nicoggsmd Honestly speaking, now I choose HISAT2---featureCounts---DESeq2 for daily use. These softwares just like iPhones... subtle differences between 7th gen and 8th. Have fun! Guang
Thanks for the issue, now I know that genome align files could be loaded in the remote track menu. Looking forward to the local version!
Hey there, unfortunately this didn't work well for me. I got a list of good-to-go cistopic_obj, but they failed to be merged: ``` > print(cistopic_obj_list[0]) > print(cistopic_obj_list[1]) > print(cistopic_obj_list[2]) ......
> > Hey there, unfortunately this didn't work well for me. I got a list of good-to-go cistopic_obj, but they failed to be merged: > > ``` > > >...
Spend 3 hrs in this issue, I think you're the right person successfully debugged. Actually the info from biomart is enough to build the annotation.
> I'm facing the same problem even after changing extract_snps.py as suggested above. Kindly help Hey @harshadajadhav95, it has been quite a while, maybe you can refer to #606? Best,...