Ilya Flyamer

Should reduce the distance from the annotation text to the target as much as possible - currently it's sometimes too far away, especially with long strings.

chromosome order

11

Is there a way to specify chromosome order when installing a genome? E.g., when downloading a human genome I want the chromosomes to be sorted in the "normal" way aschr1,...

Would be great to add an option to ignore a certain number of diagonals when fetching regions (I'd also have an option to fill them with zeros or NaN, perhaps)....

myst_nb vs myst_parser issues

5

### Describe the problem Hello! Sorry the issue is a little confusing, but that's maybe because I am new to this, and because I am myself a little confused. I...

PNG export needs higher DPI?

3

_Commit_: #### Steps to reproduce 1. Open anything in HiGlass, such as http://higlass.io/l/?d=FY_QOvYuRnKf42WuO21fcw 2. Export view as PNG 3. Export view as SVG #### Observed behavior - PNG file looks...

## Steps to reproduce 1. Add a horizontal 2D heatmap to a view (e.g. http://higlass.io/l/?d=G4_qCuJXTM2FuM-wPHrTRQ) #### Observed behavior - The horizontal heatmap has no visible colour bar (and therefore no...

Hi, I think it is currently impossible to plot tracks vertically, i.e. with swapped x and y axes? I think this would be a very useful option for Hi-C maps...

Raises an error on lines https://github.com/open2c/distiller-nf/blob/689df3e15dc5c688b7c4bbddcb8939ec097bb188/distiller.nf#L659 and https://github.com/open2c/distiller-nf/blob/689df3e15dc5c688b7c4bbddcb8939ec097bb188/distiller.nf#L717 “Cannot invoke method contains() on null object” Not sure about library names, only tried group names.

Fix zoomify with no balancing

1

I think the cooler arguments changed at some point, and there is no `--no-balance` argument anymore. I don't speak groovy, this tiny change fixed it for me, maybe it's not...

Make sure the fastq files/sra entries are not repeated by accident.