DelayedMatrixStats
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PeteHaitch
A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
``` R version 4.2.3 (2023-03-15) -- "Shortstop Beagle" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: powerpc-apple-darwin10.8.0 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY....
Following changes made to **MatrixGenerics** in https://github.com/Bioconductor/MatrixGenerics/issues/23, need to update client packages such as **DelayedMatrixStats**. Process will be something like: - [ ] Add unit tests; something like https://github.com/HenrikBengtsson/matrixStats/blob/ff261339136ec7c5cb03a882449a50325f57c159/tests/rowCollapse.R#L16-L28 -...
# Background **matrixStats** uses `ties.method = "max"` as the default for `colRanks()` and `rowRanks()` for legacy reasons, but we want eventually update to `ties.method = "average"` to align it with...
Might be useful in the transition to the **MatrixGenerics** package. E.g., you'd only get the `matrix` method if **matrixStats** was installed. See https://ropensci.slack.com/archives/C026GCWKA/p1534959381000100 for a discussion on implementing conditional use...
Probably matching default value to whatever the implicit default is in **matrixStats**.
Like `rowAvgsPerColSet()`, but where `S` is list so that subsets can be of different lengths. Might restrict `FUN` to be support `cols` and `rows` arguments to promote efficient computation. See...
See https://github.com/davismcc/scater/issues/45#issuecomment-358455875
People might stick other matrix-like objects to construct a *DelayedMatrix*, e.g., *data.frame*, *DataFrame*, *tibble*, *data.table*. It will be hard/impossible to test all possibilities, but should perhaps test some of the...
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A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package