Riccardo Pellarin

Incorrect polymorphic behaviour in the LogWrapper(IMP::isd::ISDRestraintsTemp)

2

referring to #927, we have an ISDRestraint class working and passing tests. Now we want the LogWrapper get the probabilities from a IMP::isd::ISDRestraintsTemp. (we couldn't commit the LogWrapper code and...

the problem is that in Hierarchy.cpp we check whether a hierarchy is well built. For instance: ``` if (!h.get_as_xyzr()) { TEST_FAIL("Leaf "

IMP/pmi returns type error during RB construction

4

``` import IMP; print(IMP.__version__) develop-3c9d63925c ``` ``` rpellarin@ibcp22-087:~/imp-project/imp-20220912/Alphafold-IMP/Dpb10$ ~/imp-project/imp-20220912/imp-release/setup_environment.sh python test.py ReplicaExchange: MPI was found. Using Parallel Replica Exchange BuildSystem.add_state: setting up molecule 25S copy number 0 BuildSystem.add_state: molecule 25S...

` --------------------------------------------------------------------------- IndexError Traceback (most recent call last) [](https://localhost:8080/#) in 3 #@markdown run the cell to compute and display the SOM 4 ----> 5 som_seq.main(ali="seq.aln", batch_size=10, use_jax=True, outname="som", somside=75, nepochs=100,...

model for llama.cpp

1

About your locally hosted example ``` from paperqa import Settings, ask local_llm_config = dict( model_list=[ dict( model_name="my_llm_model", litellm_params=dict( model="my_llm_model", api_base="http://127.0.0.1:8080/", api_key="sk-no-key-required", temperature=0.1, frequency_penalty=1.5, max_tokens=512, ), ) ] ) answer =...