Pedram Torabian
Pedram Torabian
I wanted to run the following code for TCGA-BRCA data: _maindata
Thank you! So you mean like this: "BaronPancreasData('human')"? Then, when I want to make the query out of this dataset, how should I do it? This is the workflow I...
Thank you it worked. I thought it only has pancreas samples while it has everything other than pancreas. Here is the pipeline I followed: eh
Thank you for questioning my programming skills!!
When I want to run this: `gse
Hi @vdsukhov I could generate some results for my data (Visium) but I do not know why it shows only two pathways and for each has two images? It's because...
Thank you @assaron This is the code I use: `devtools::install_github('ctlab/fgsea') library(fgsea) library(Seurat) library(SeuratData) library(ggplot2) library(patchwork) getwd() data
Thanks so much for the prompt response @assaron It worked! Just wanted to let you know that the legend has been removed. Still scaling and interpreting is the question. 
Hi I tried it after a few months and get this weird image: I do not know why some parts of the image is not showing. Do you think is...
I try to plot the results using heatmap or dotplot but getting the errors.  The error as showed in the image is :Error: Invalid value for "--pvalues-path": Path...