Pavel Avdeyev

Convert datasets from ASmedian to our format and send me on email. Tested four cycles and as4 on this datasets.

Estimate working time for dataset with follow parameters: 50 genomes, 10000 genes, 20 chromosomes, 1000 rearregements per branch, 20 insertiond, 20 deletions.

Start support input subtrees

1

If user put a few subtrees in [Tree] section, we need to reconstruct tree with use this subtrees

Rewrite all documentation for current situation in MGRA.

Finish all linearize algorithms corresponfing paper

See Sergey's email about segfault problem on murphy dataset. Problem is which graph go to blossom V algorithm (potentially with infinity vertices).