Parul Kudtarkar

icon indicating a website link https://sortingmydna.com/ icon indicating an email [email protected]

icon company Gaulton Lab, UCSD School of Medicine icon location La Jolla icon location Bioinformatics | Machine learning |Cloud computing | Data Visualization | Empathy

Results 9 comments of Parul Kudtarkar

higher resolution nucpos.bed.gz is empty

Same issue, nucpos.bed.gz files empty. looking forward to the updates. Thank you so much!

higher resolution nucpos.bed.gz is empty

Thanks for a very prompt response. Seems the issue is OS specific and docker could be possible fix. I will keep you posted.

Force layout

I am interested in force layout as well. I am specifically interested in using force layout for following implementation (polar layout)- https://codesandbox.io/s/n3w687vmqj Thanks!

Force layout

Hi @j1mie! I will check the package. react force-graph is another good alternative. https://www.npmjs.com/package/force-graph

community contributed plugin track

Hi @akmorrow13, Thanks for confirming! I am thinking of chromatin interactions

community contributed plugin track

I am thinking ChIA-PET or Capture Hi-C in .bed format.

community contributed plugin track

Do you know when the bed format support will be added? Is there anything I can do to assist? Thank you very much!

community contributed plugin track

Excellent! Thank you so much @akmorrow13 I will keep you posted

assignments between snRNA and snATAC

@huangyh09 thanks. Actually, thinking of (1) pool the cells per donor in ATAC and RNA, and then compare them to match up which is which, (2) go back to the...