Parsoa Khorsand

Build fails Jellyfish 2.3.0 with Python bindings

4

I get the following output when building Jellyfish 2.3.0 tarball on Ubuntu 18.0.2 LTS with python bindings enabled. Configure runs ok but make seems not to find some needed sources....

ChildIOException: File/directory is a child to another output

9

I have installed the latest version along with all the dependencies and have configured it to test run on a single sample using all three tools (Manta, GATK, Platypus). It...

Running BayesTyper on custom VCF file

11

I've been trying to run BayesTyper on a VCF file ([uploaded here](https://gist.github.com/Parsoa/1e5407b6f45ab54a6736f7d8a234fa1f) which is basically the merged set of calls from HG00514 and HG00733 from [here](http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/hgsv_sv_discovery/working/20180627_PanTechnologyIntegrationSet/) with duplicates removed). BayesTyper's...

I get the following error during the `manta_run_workflow` stage: ``` [2020-05-17T19:56:16.703129Z] [23217_1] [WorkflowRunner] [ERROR] [makeLocusGraph_chromId_438_chr19_KI270933v1_alt_0000] Error Message: [2020-05-17T19:56:16.705237Z] [23217_1] [WorkflowRunner] [ERROR] [makeLocusGraph_chromId_438_chr19_KI270933v1_alt_0000] Last 6 stderr lines from task (of 6...

sqlite3.OperationalError: disk I/O error

2

Hi Mehrdad, I'm trying to run advntr on some PacBio reads mapped to hg38 and I'm using the hg38 models (hg38_selected_VNTRs_Illumina.db) however I get a `sqlite3.OperationalError` when running with the...

java.lang.NoClassDefFoundError: org.phoenixframework.channels.Socket$PhoenixWSListener

2

I don't if this is really an issue with the library or a mistake on my end so I post here anyway. This is my build configuration: apply plugin: 'com.android.application'...