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                                            Polina

[E::bwa_idx_load_from_disk] fail to locate the index files when running

Hi, when I run get-reads-alt-unmap.sh ( [https://github.com/humanlongevity/HLA/wiki/BAMs-compatible-with-xHLA]) in.bam out.bam to process my data, there was an error message: ``` *****WARNING: Query A01013:41:HYL5YDSXX:4:2664:1072:7138 is marked as paired, but its mate does...

BWAKit run-gen-ref can't get files for resource-GRCh38

Hello, I am also seeing this issue, because I have a such problem with running `bwa.kit/run-gen-ref hs38DH`. Polina.