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                                            PKUfjh

Lack of diversity in the 1ake example prediction by DiG

No, since 1ake and 4ake has the same sequence, the input is the same with 1ake for 4ake.发自我的iPhone------------------ Original ------------------From: Advaith ***@***.***>Date: Tue,Apr 23,2024 6:59 PMTo: microsoft/Graphormer ***@***.***>Cc: PKUfjh ***@***.***>,...

Lack of diversity in the 1ake example prediction by DiG

> Thanks for the response. > > When you get the pdb output generated from the code, were you able to visualize the sidechains too? We get a pdb with...

discriminate frames with virials labels in Multisystem class

> This is a breaking change to the code that has potential influence on other codes using `dpdata.MultiSystems` with explicit formula. > > I do not support the merging of...

Errors brought by new commits

OK, can the flag be automatically determined based on the users environment?

About secondary structure and block adjacency tensors in the newly published snake venom toxin binder design paper

I also want the authors or the contributors provide a script to perform this task, many thanks!

Missing Alignment Visualizations in html Output

I am facing the same issue, I can not visualize the alignment results.

Missing Alignment Visualizations in html Output

> could you please provide a simple example? Sure, so the input dir "PDB_AAAAAA" is just a list of pdb files. Then I use the command: ```bash foldseek easy-search ./PDB_AAAAAA...

Missing Alignment Visualizations in html Output

Also I confirm with the first comment in this issue that the version "v7.04e0ec8" provides the proper structure visulization.