Nour-al-dain Marzouka
Nour-al-dain Marzouka
Similar observation, "-1" values as positions of some variants. Any idea of the reason? Some selected example lines: 1 -1 C G 0 0 0 16 1 -1 C G...
Great! But what are these -1s? And if I already have some data with these -1s, then should I repeat the analysis?
Could you let me know if you found any solution for the hg19? I have the same question because I have a large list of WES bams (hg19). chr6 chr6_ssto_hap7...
Any idea how to solve this? I am facing this issue when trying to convert the GAM to BAM format. Any alternative ways? Thanks!
If I generated a VCF file for a trio (with a father using deeptrio) or a solo male (using deepvariant) without chrX,chrY option. Can I fix the VCF after the...