Nil Mu

@LinuxPersonEC Hi fellow sys admin! I'm helping a user on my cluster too, we also uses slurm & red hat v8. I'm not sure if this is still relevent, but...

@molinfzl If you still need more help with this issue, `--executor slurm` is the correct choice for a slurm HPC cluster, because nextflow needs to submit jobs to slurm, so...

@lynnyummy @kuangzhuoran If you still need help with this problem, I might have a solution: https://github.com/hillerlab/make_lastz_chains/pull/85/commits/57b140fec9b061c0e7b783e048438d9bd7e4fd0b

Thanks for the info, but things are a little bit different on my side or I'm not sure if this is intended behavior. One of my run failed at the...

Hi @jiqicn , I feel the same! Python virtual environment is one of the most important things for using Python. But I would prefer making a new episode between episode...

Thanks for the info! Do we have an active discussion thread somewhere about this topic? I think switch to `miniforge` and `conda-forge` is a very stable choice, and using `mamba`...

I can see `pip` is easier to set up for beginners, but I don't think `pip` can handle complicated dependency trees like `conda`, and `pip` has different installation commands for...

@tobyhodges This looks terrific! Are you trying to add this episode to every Python-based workshop? For the "Tools to manage Python environments" part, are you going to mention other tools...

@KabitaBaral1 @qitingcai A quick fix I used is to directly modify the `parallelization/nextflow_wrapper.py` file. This is the file that controls the nextflow params. I'm using a slurm HPC cluster too....

Hello, The --T flag is the temp working directory, so it should be a folder path. I found this info by running `mfannot -h`. Regards, Nil