Nicobouch

Results 4 comments of Nicobouch

package or namespace load failed for ‘UpSetR’

I'm not using conda. Here is the whole error message: ________________ Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:MACS2_CONSENSUS (H3K9)' Caused by: Process `NFCORE_CHIPSEQ:CHIPSEQ:MACS2_CONSENSUS (H3K9)` terminated with an error exit status (1) Command...

Add batch correction

Do you know if the batch correction had been implemented in the pipeline ?

Can we do chip seq analysis using nextflow without input sample?

The possible meaning is that "input" DNA was not sequenced; only ChIP DNA is available. Can the pipeline be run without input sequences? I have the same question. Thanks.

Not a valid path value when provide genome by fasta and gtf in compressed gz format, and not providing genome index or gene bed

same for the --gff option