NickWoodall

The template search is essentially redone during colabfold_batch via the same mechanism as the custom template database flag, just with a selection of .cif files provided by the .m8 file...

I put put up this issue last month and it was fixed for me. Try updating your colabfold version? #560 They even more recently fixed running colab_search to produce templates...

As far as I know, you need a separate colabfold_batch command for each m8 file with its corresponding a3m file. The m8 files basically make a custom template database which...