Niccolò Arecco
Niccolò Arecco
Hi, thanks for the suggestion, but it still failed: ``` qsub -q ${QUEUE_NAME} -V -pe smp ${Num_Processes} -l gpu=${Num_GPUs} \ -l virtual_free=${Num_Ram}G,h_vmem=${Num_Ram}G,h_rt=${Num_Hours}:59:00 \ -b y \ colabfold_batch ${INPUT_DIR} ${OUTPUT_DIR} --num-recycle...
Hi Martin, I do submit the script as a bash script where qsub is the last command. ``` bash send_job_with_qsub.sh ``` and I get that error message with any combination...
Was this issue fixed with the new release `v1.3`? I believe PR #148 by [YoshitakaMo](https://github.com/YoshitakaMo) (that was closed?) was gonna solve this issue. Also PR #150 is also probably going...
Tried both solutions and did not work...
> you can disable new version notification in Preferences. Good. > Did you quit Stretchly before updating? Yes, of course. Still no update from command line. Maybe it's because in...
Hey, I'm running colabfold locally instead of alphafold2 but I got the exact same error. ```sh 2024-04-27 18:43:37,124 Running colabfold 1.5.2 (8c745219964d6bfb878dd6fb53b5a2a05b009391) 2024-04-27 18:43:45,887 Running on GPU 2024-04-27 18:43:47,089 Found...
That's great, thanks!
Any update on this issue?
Hi @tristanic, thanks a lot for explaining. Probably the easiest way to control for this is using both iGraph and NetworkX algorithms and use the overlap. Have you tried that?...
This is also tangential to my day-to-day work :D I really like the idea, but yeah bit more exploration is needed on my side for what I'd like it to...